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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25438937_25442979_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25438937 - 25442979
Intron Length:
4043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTAATTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTAATTTAATT
Flanking Amino Acid:
CFLEPTSEAKYVPPDLCICN
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
78.3
36.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
86.2
0.81
0.8
80.2
36.9
Minor 5ss
36.9
-1.5
3.1
49.9
40.3
Minor BPS
70
0.71
1.5
85.64
34.4

Associated Gene:

Gene:
RYR3
Ensembl Gene ID:
ENSAPLG00000005134
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045920
25396891 - 25443177
46287
ENSAPLT00000030790
25438868 - 25615901
177034
ENSAPLT00000005441
25438868 - 25615901
177034