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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25443088_25451026_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25443088 - 25451026
Intron Length:
7939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCATGTTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAT
U12 Branch Point Sequence:
TTTTCTGTCATG
Flanking Amino Acid:
ANTGDNAGEGAAQGGHRTLL
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
72.5
0.56
1.2
75
39.9
Major PPT
74.8
0.56
0.9
69.8
36.4
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
48.6
-0.2
2.4
66.31
42.6

Associated Gene:

Gene:
RYR3
Ensembl Gene ID:
ENSAPLG00000005134
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030790
25438868 - 25615901
177034
ENSAPLT00000005441
25438868 - 25615901
177034