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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25452175_25454487_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25452175 - 25454487
Intron Length:
2313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGCAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TTTTATATAATC
Flanking Amino Acid:
FDVGLRENAAGEACWWTIHP
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
67.5
39.2
Major BPS
79
0.72
1
78.4
31.2
Major PPT
79
0.65
0.8
76.9
31.9
Minor 5ss
36.2
-1.6
3.2
46.5
48.8
Minor BPS
60.8
0.32
1.7
76.21
33.7

Associated Gene:

Gene:
RYR3
Ensembl Gene ID:
ENSAPLG00000005134
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030790
25438868 - 25615901
177034
ENSAPLT00000005441
25438868 - 25615901
177034