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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25458688_25462007_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25458688 - 25462007
Intron Length:
3320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
AATTTGCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ATCTTCTGAATT
Flanking Amino Acid:
PSTDQNDSQQKKVLYETGGA
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
80.7
33.7
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
70.1
0.45
0.9
63
38.6
Minor 5ss
33.7
-1.9
2.8
42.7
38.3
Minor BPS
67
0.61
1.4
78.66
37.9

Associated Gene:

Gene:
RYR3
Ensembl Gene ID:
ENSAPLG00000005134
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030790
25438868 - 25615901
177034
ENSAPLT00000005441
25438868 - 25615901
177034