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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25462083_25463179_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25462083 - 25463179
Intron Length:
1097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGACA
5'SS Class:
major
3'SS Sequence:
CTCATATGTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCCTTGATG
Flanking Amino Acid:
SLWRVEPLRISWSGSNIKWG
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.8
39.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
67.8
0.4
1
65.8
39.9
Minor 5ss
30.8
-2.2
3.3
40.8
45.2
Minor BPS
82.4
0.88
1.1
82.57
32

Associated Gene:

Gene:
RYR3
Ensembl Gene ID:
ENSAPLG00000005134
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030790
25438868 - 25615901
177034
ENSAPLT00000005441
25438868 - 25615901
177034