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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25463337_25470083_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25463337 - 25470083
Intron Length:
6747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTATGTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTTTCATGAACT
Flanking Amino Acid:
SSAFCFRASKELKEKQDSTL
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78.2
29.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.7
0.6
0.9
69.5
41.5
Minor 5ss
32.3
-2
3.3
42.9
44.7
Minor BPS
69
0.68
1.7
87.65
36.8

Associated Gene:

Gene:
RYR3
Ensembl Gene ID:
ENSAPLG00000005134
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030790
25438868 - 25615901
177034
ENSAPLT00000005441
25438868 - 25615901
177034