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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25505964_25506926_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25505964 - 25506926
Intron Length:
963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATTTG
5'SS Class:
major
3'SS Sequence:
TATTGCTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TATTGCTTAACA
Flanking Amino Acid:
MMALHIPEENRCVDILELCE
Intron Amino Acid Position:
1499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
72.3
40
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
75.2
0.57
1
70.1
39.9
Minor 5ss
42.1
-0.9
3.2
57.9
46.7
Minor BPS
76.5
0.83
1.7
84.73
35

Associated Gene:

Gene:
RYR3
Ensembl Gene ID:
ENSAPLG00000005134
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030790
25438868 - 25615901
177034
ENSAPLT00000005441
25438868 - 25615901
177034