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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25512652_25519406_F

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25512652 - 25519406
Intron Length:
6755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCTGTATTT
Flanking Amino Acid:
EPREEEEKSPTTLKELISQT
Intron Amino Acid Position:
1914

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
83.4
29
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.7
0.83
0.7
85.7
28.9
Minor 5ss
48
-0.2
2.8
68.9
36.6
Minor BPS
56.4
0.28
2.2
83.14
39

Associated Gene:

Gene:
RYR3
Ensembl Gene ID:
ENSAPLG00000005134
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030790
25438868 - 25615901
177034
ENSAPLT00000005441
25438868 - 25615901
177034