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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25532097_25532566_F

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25532097 - 25532566
Intron Length:
470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GATTATCTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TATTACTGATTA
Flanking Amino Acid:
DLPSQGYKREGDEEEEEEEI
Intron Amino Acid Position:
2227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
74.2
0.54
0.9
70.7
40.4
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
50.2
0
1.9
66.81
39.3

Associated Gene:

Gene:
RYR3
Ensembl Gene ID:
ENSAPLG00000005134
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030790
25438868 - 25615901
177034
ENSAPLT00000005441
25438868 - 25615901
177034