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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25540328_25541187_F

Intron Information:

Intron Rank:
49
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25540328 - 25541187
Intron Length:
860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTGTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
TAACTTACAATT
Flanking Amino Acid:
NFDPKPVSTANLVLPEKLEY
Intron Amino Acid Position:
2565

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.8
85.9
23.8
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
85
0.79
0.8
78.9
33.1
Minor 5ss
33.7
-1.9
2.8
42.6
38.4
Minor BPS
45.1
-0.2
1.7
60.52
36.8

Associated Gene:

Gene:
RYR3
Ensembl Gene ID:
ENSAPLG00000005134
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030790
25438868 - 25615901
177034
ENSAPLT00000005441
25438868 - 25615901
177034