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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25541267_25542926_F

Intron Information:

Intron Rank:
50
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25541267 - 25542926
Intron Length:
1660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAACT
5'SS Class:
strong_major
3'SS Sequence:
TATATCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TCTTATTTCACT
Flanking Amino Acid:
HSHDKWAFDKTNNGWKYGVS
Intron Amino Acid Position:
2592

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
78.1
36.3
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
84.4
0.77
0.8
81.4
35.8
Minor 5ss
34.7
-1.7
3.3
49.7
46.3
Minor BPS
59.9
0.39
2
80.33
41.9

Associated Gene:

Gene:
RYR3
Ensembl Gene ID:
ENSAPLG00000005134
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030790
25438868 - 25615901
177034
ENSAPLT00000005441
25438868 - 25615901
177034