Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25561422_25562049_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25561422 - 25562049

Intron Length:

628

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTT|GTAAGTACT

5'SS Class:

major

3'SS Sequence:

TCTTTTCCTCTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTGAT

U12 Branch Point Sequence:

TACTGATTACCT

Flanking Amino Acid:

SQYQFGVDLLLGDVQVSCYR

Intron Amino Acid Position:

2978

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.2

0.67

79.2

33.9

Major BPS

83.5

0.83

0.8

71.6

36.4

Major PPT

84.6

0.78

0.7

77.9

Minor 5ss

40.9

-1

2.8

58.9

39.3

Minor BPS

47.6

-0.1

2.3

70.02

46.5

Associated Gene:

Gene:

RYR3

Ensembl Gene ID:

ENSAPLG00000005134

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030790

25438868 - 25615901

177034

ENSAPLT00000005441

25438868 - 25615901

177034