About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25584679_25586213_F

Intron Information:

Intron Rank:
72
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25584679 - 25586213
Intron Length:
1535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TGTATAACCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATCTGTATAACC
Flanking Amino Acid:
FEEKLVQDLATPPKKDEEEE
Intron Amino Acid Position:
3488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
77.8
36.6
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
67
0.38
1
59.3
40.7
Minor 5ss
41.3
-1
2.8
62.9
41
Minor BPS
49.8
-0
2
65.2
40.7

Associated Gene:

Gene:
RYR3
Ensembl Gene ID:
ENSAPLG00000005134
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030790
25438868 - 25615901
177034
ENSAPLT00000005441
25438868 - 25615901
177034