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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25586324_25587862_F

Intron Information:

Intron Rank:
73
Intron Class:
major_hybrid
Intron Phase:
2
Intron Coordinates:
25586324 - 25587862
Intron Length:
1539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATAG
5'SS Class:
strong_major
3'SS Sequence:
AACACAAAAAGAG|C
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TATTTCTTAACA
Flanking Amino Acid:
YFSRNALTERSCQEEEEEEE
Intron Amino Acid Position:
3524

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
77.7
33.3
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
39.9
-0.5
1.6
30.4
33.5
Minor 5ss
37.3
-1.4
3
46.6
48.7
Minor BPS
86.5
1.14
0.9
88.38
28

Associated Gene:

Gene:
RYR3
Ensembl Gene ID:
ENSAPLG00000005134
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030790
25438868 - 25615901
177034
ENSAPLT00000005441
25438868 - 25615901
177034