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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25587915_25588202_F

Intron Information:

Intron Rank:
74
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25587915 - 25588202
Intron Length:
288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCAAACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TGTTCCCAAACA
Flanking Amino Acid:
EEEEKEKTFEEKEMEKQRTL
Intron Amino Acid Position:
3542

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.7
89.7
22.4
Major BPS
85
0.87
0.8
85.6
23
Major PPT
65
0.34
0.9
58.6
35
Minor 5ss
34
-1.8
3.2
48.5
47.2
Minor BPS
60.5
0.33
2
77.12
39.5

Associated Gene:

Gene:
RYR3
Ensembl Gene ID:
ENSAPLG00000005134
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030790
25438868 - 25615901
177034
ENSAPLT00000005441
25438868 - 25615901
177034