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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25588303_25588595_F

Intron Information:

Intron Rank:
75
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25588303 - 25588595
Intron Length:
293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GTTTTATTGACT
Flanking Amino Acid:
MVLQMISASKGHTGPMVVET
Intron Amino Acid Position:
3575

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
79
0.65
1
75.8
38.2
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
68.1
0.65
1.6
84.94
35

Associated Gene:

Gene:
RYR3
Ensembl Gene ID:
ENSAPLG00000005134
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030790
25438868 - 25615901
177034
ENSAPLT00000005441
25438868 - 25615901
177034