Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25588676_25588938_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25588676 - 25588938

Intron Length:

263

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATGCTT

5'SS Class:

strong_major

3'SS Sequence:

CCATACCCTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCAAAT

U12 Branch Point Sequence:

TTTCCTCCAAAT

Flanking Amino Acid:

LNGGNTIVQQKMLDYLKEKK

Intron Amino Acid Position:

3602

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

75.3

40.4

Major BPS

64.7

0.37

1.1

69.5

34.1

Major PPT

65.1

0.34

0.9

55.2

35.9

Minor 5ss

36.8

-1.5

3.5

56.4

47.8

Minor BPS

49.4

0.04

76.23

39.7

Associated Gene:

Gene:

RYR3

Ensembl Gene ID:

ENSAPLG00000005134

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030790

25438868 - 25615901

177034

ENSAPLT00000005441

25438868 - 25615901

177034