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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25590682_25590923_F

Intron Information:

Intron Rank:
78
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25590682 - 25590923
Intron Length:
242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
CTTCAATCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTCTTCAATC
Flanking Amino Acid:
GLGMVTEEGTLIVRERGEKV
Intron Amino Acid Position:
3652

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.3
70.7
41.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
72.4
0.5
0.9
65.2
34.9
Minor 5ss
36.6
-1.5
2.7
43
38.4
Minor BPS
74
0.73
1.4
82.42
31.4

Associated Gene:

Gene:
RYR3
Ensembl Gene ID:
ENSAPLG00000005134
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030790
25438868 - 25615901
177034
ENSAPLT00000005441
25438868 - 25615901
177034