Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25591539_25591923_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25591539 - 25591923

Intron Length:

385

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

CTTATTATTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATTAT

U12 Branch Point Sequence:

AATCACTTATTA

Flanking Amino Acid:

LQLLCEGHNNDFQNYLRTQM

Intron Amino Acid Position:

3685

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.8

79.4

28.8

Major BPS

84.7

0.86

74.3

40.7

Major PPT

84.1

0.77

0.8

81.6

34.6

Minor 5ss

32.1

-2

3.1

36.8

41.9

Minor BPS

49.9

-0

1.7

61.89

37.8

Associated Gene:

Gene:

RYR3

Ensembl Gene ID:

ENSAPLG00000005134

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030790

25438868 - 25615901

177034

ENSAPLT00000005441

25438868 - 25615901

177034