Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25592013_25592417_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25592013 - 25592417

Intron Length:

405

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGAAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTCCCTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATAAA

U12 Branch Point Sequence:

GAAAATATAACA

Flanking Amino Acid:

STVDYLLRLQESISDFYWYY

Intron Amino Acid Position:

3715

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.3

0.88

0.8

29.3

Major BPS

0.3

62.3

30.4

Major PPT

85.7

0.8

0.6

85.9

21.2

Minor 5ss

26.1

-2.7

2.9

29.9

43.2

Minor BPS

45.8

-0.3

1.7

53.63

37.4

Associated Gene:

Gene:

RYR3

Ensembl Gene ID:

ENSAPLG00000005134

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030790

25438868 - 25615901

177034

ENSAPLT00000005441

25438868 - 25615901

177034