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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25592547_25592926_F

Intron Information:

Intron Rank:
82
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25592547 - 25592926
Intron Length:
380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACAGA
5'SS Class:
strong_major
3'SS Sequence:
TTAATTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTCTCTTAATT
Flanking Amino Acid:
IFNSLTEYIQGPCIGNQQSL
Intron Amino Acid Position:
3758

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
71.3
40.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.5
0.73
0.8
81.5
35.8
Minor 5ss
38.1
-1.3
3
49.1
46.7
Minor BPS
82.6
1.1
1
93.07
28.2

Associated Gene:

Gene:
RYR3
Ensembl Gene ID:
ENSAPLG00000005134
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030790
25438868 - 25615901
177034
ENSAPLT00000005441
25438868 - 25615901
177034