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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25603461_25605735_F

Intron Information:

Intron Rank:
90
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25603461 - 25605735
Intron Length:
2275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTATGTAAA
5'SS Class:
major
3'SS Sequence:
TTTATCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATCT
Flanking Amino Acid:
GQWDRLVINTPSFPNNYWDK
Intron Amino Acid Position:
4476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
67.2
39.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
89.8
0.89
0.7
84.9
29.8
Minor 5ss
43
-0.8
2.5
54.9
42.7
Minor BPS
80.3
1.03
1.4
95.73
30.7

Associated Gene:

Gene:
RYR3
Ensembl Gene ID:
ENSAPLG00000005134
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030790
25438868 - 25615901
177034
ENSAPLT00000005441
25438868 - 25615901
177034