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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25617261_25618436_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25617261 - 25618436
Intron Length:
1176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
ACTTTCTCAAGA
Flanking Amino Acid:
NNLKGESKENDPLKPDVPEE
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
81.9
32.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
84.3
0.77
0.8
77.4
36.9
Minor 5ss
44.4
-0.6
3.2
66.3
44.6
Minor BPS
54.1
0.12
1.8
65.27
41.4

Associated Gene:

Gene:
AVEN
Ensembl Gene ID:
ENSAPLG00000005096
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005272
25617142 - 25715466
98325