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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25618786_25620251_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25618786 - 25620251
Intron Length:
1466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCTG
5'SS Class:
major
3'SS Sequence:
CTTGTATTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TATATAATAATT
Flanking Amino Acid:
RLNVAAELVQASTPAELPQM
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
66.2
44.9
Major BPS
80
0.75
1
78.6
31
Major PPT
75.5
0.57
0.8
73.7
35.9
Minor 5ss
34.4
-1.8
3.4
47.3
48.1
Minor BPS
49.3
0.03
1.9
72.09
38.4

Associated Gene:

Gene:
AVEN
Ensembl Gene ID:
ENSAPLG00000005096
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005272
25617142 - 25715466
98325