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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25620348_25623320_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25620348 - 25623320
Intron Length:
2973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAGAA
5'SS Class:
major
3'SS Sequence:
TTCTGTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACG
Flanking Amino Acid:
WDTESIYSKQLSALSVDCQS
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
71.3
34.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
83.8
0.76
0.8
81.4
35
Minor 5ss
35.3
-1.7
3.4
46.9
48.4
Minor BPS
82
0.87
1.1
82.56
32

Associated Gene:

Gene:
AVEN
Ensembl Gene ID:
ENSAPLG00000005096
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005272
25617142 - 25715466
98325