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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25623392_25694021_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25623392 - 25694021
Intron Length:
70630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTTTTTATTT
Flanking Amino Acid:
TDFSVLLSSAGDSFTQFRFA
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.8
90.9
28.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.5
0.87
0.7
84.9
29.9
Minor 5ss
45.3
-0.5
2.9
66
45.2
Minor BPS
64.6
0.54
1.5
79.7
37

Associated Gene:

Gene:
AVEN
Ensembl Gene ID:
ENSAPLG00000005096
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005272
25617142 - 25715466
98325