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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25745821_25747888_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25745821 - 25747888
Intron Length:
2068

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
GTTATCTAATCT
Flanking Amino Acid:
VNTSDPDMRREMEQSMNMLN
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.8
38.5
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
81.8
0.71
0.8
77.3
30.3
Minor 5ss
37
-1.5
2.8
43.2
43.8
Minor BPS
49.9
0.08
2
72.94
43.8

Associated Gene:

Gene:
EMC7
Ensembl Gene ID:
ENSAPLG00000029303
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027974
25739236 - 25753565
14330