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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25747970_25748498_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25747970 - 25748498
Intron Length:
529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTGCA
5'SS Class:
major
3'SS Sequence:
GTTTTCTGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
AAATACTTACTG
Flanking Amino Acid:
GWTDFLMNPMVVMMVLPLLI
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.5
34.8
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
77.5
0.62
0.9
73.7
36.9
Minor 5ss
39.2
-1.2
3
46.9
43.8
Minor BPS
48.7
-0.2
1.8
53.05
41.5

Associated Gene:

Gene:
EMC7
Ensembl Gene ID:
ENSAPLG00000029303
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027974
25739236 - 25753565
14330