About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25748638_25750594_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25748638 - 25750594
Intron Length:
1957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTTCATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
GTATTTCTAATT
Flanking Amino Acid:
RVDITSKGKMRARYVNYIKT
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
72.3
0.5
0.9
71.9
38.7
Minor 5ss
38.4
-1.3
3.3
55.8
48.4
Minor BPS
57.5
0.31
1.6
73.73
37.3

Associated Gene:

Gene:
EMC7
Ensembl Gene ID:
ENSAPLG00000029303
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027974
25739236 - 25753565
14330