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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25772394_25772861_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25772394 - 25772861
Intron Length:
468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TGTTACTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TATATTTTACAT
Flanking Amino Acid:
LSSHTERADDRNIHILKELL
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.7
1.05
0.6
92.2
16.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
84.5
0.78
0.8
81.3
36
Minor 5ss
33.9
-1.8
2.8
41.8
44.8
Minor BPS
51
0.11
1.7
70.54
40.3

Associated Gene:

Gene:
KATNBL1
Ensembl Gene ID:
ENSAPLG00000004713
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030213
25770737 - 25783936
13200
ENSAPLT00000020370
25771612 - 25783783
12172
ENSAPLT00000004885
25770737 - 25777217
6481
ENSAPLT00000042898
25771612 - 25783936
12325