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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25772394_25773464_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25772394 - 25773464
Intron Length:
1071

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TGTTACTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TATATTTTACAT
Flanking Amino Acid:
VKSLLKSKYEENIHILKELL
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
79
35.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
84.5
0.78
0.8
81.3
36
Minor 5ss
41.6
-0.9
2.8
51.4
39.2
Minor BPS
51
0.11
1.7
70.54
40.3

Associated Gene:

Gene:
KATNBL1
Ensembl Gene ID:
ENSAPLG00000004713
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030505
25770737 - 25783315
12579