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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25772952_25773464_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25772952 - 25773464
Intron Length:
513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TATGTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GGGTATTTAAAT
Flanking Amino Acid:
VKSLLKSKYEEYVIVGLNWL
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
79
35.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
83.3
0.75
0.9
76.8
37.1
Minor 5ss
41.6
-0.9
2.8
51.4
39.2
Minor BPS
54.9
0.23
1.6
67.98
42.3

Associated Gene:

Gene:
KATNBL1
Ensembl Gene ID:
ENSAPLG00000004713
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042898
25771612 - 25783936
12325
ENSAPLT00000030213
25770737 - 25783936
13200
ENSAPLT00000020370
25771612 - 25783783
12172
ENSAPLT00000004885
25770737 - 25777217
6481