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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25773555_25773637_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25773555 - 25773637
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAATA
5'SS Class:
major
3'SS Sequence:
TGTTTTTTTTAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ACTTCTGAAACA
Flanking Amino Acid:
VVDCLPVLTNSLQEEKPYIS
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
74.3
36
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
81.8
0.72
1
86.9
31.1
Minor 5ss
35.3
-1.7
3.3
48.9
46.9
Minor BPS
48.4
-0.1
2.3
64.77
42.4

Associated Gene:

Gene:
KATNBL1
Ensembl Gene ID:
ENSAPLG00000004713
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030505
25770737 - 25783315
12579
ENSAPLT00000030213
25770737 - 25783936
13200
ENSAPLT00000020370
25771612 - 25783783
12172
ENSAPLT00000004885
25770737 - 25777217
6481
ENSAPLT00000042898
25771612 - 25783936
12325