Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25773985_25775485_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25773985 - 25775485

Intron Length:

1501

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTTGA

5'SS Class:

strong_major

3'SS Sequence:

AAACATTATACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAA

U12 Branch Point Sequence:

GTGTTCTTAAAA

Flanking Amino Acid:

SSKYSGFFSEVSQDHETMAQ

Intron Amino Acid Position:

117

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

95.5

1.07

0.7

84.1

30.2

Major BPS

82.2

0.8

71.9

35.8

Major PPT

62.7

0.29

1.1

54.7

43.7

Minor 5ss

39.6

-1.2

2.8

49.9

46.3

Minor BPS

69.6

0.61

1.4

73.1

38.5

Associated Gene:

Gene:

KATNBL1

Ensembl Gene ID:

ENSAPLG00000004713

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020370

25771612 - 25783783

12172

ENSAPLT00000004885

25770737 - 25777217

6481

ENSAPLT00000042898

25771612 - 25783936

12325

ENSAPLT00000030505

25770737 - 25783315

12579

ENSAPLT00000030213

25770737 - 25783936

13200