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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25775766_25776115_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25775766 - 25776115
Intron Length:
350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGGG
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
CTTTACTAAAAT
Flanking Amino Acid:
SPKQLASYTNRVTVGKTVTS
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
60.8
44.4
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
88.3
0.86
0.7
84.9
29.9
Minor 5ss
28.4
-2.5
3.5
38
46.9
Minor BPS
56.4
0.28
2
78.16
43.8

Associated Gene:

Gene:
KATNBL1
Ensembl Gene ID:
ENSAPLG00000004713
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030505
25770737 - 25783315
12579
ENSAPLT00000030213
25770737 - 25783936
13200
ENSAPLT00000020370
25771612 - 25783783
12172
ENSAPLT00000004885
25770737 - 25777217
6481
ENSAPLT00000042898
25771612 - 25783936
12325