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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25776157_25777700_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25776157 - 25777700
Intron Length:
1544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TCTTCCCGATTT
Flanking Amino Acid:
SSSTRKIMKEGKKSPKQLAS
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.8
88.6
27.1
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
83.8
0.76
0.7
79.1
26.6
Minor 5ss
42.7
-0.8
3.4
64.1
47.4
Minor BPS
49.1
0.01
2
73.51
43.5

Associated Gene:

Gene:
KATNBL1
Ensembl Gene ID:
ENSAPLG00000004713
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020370
25771612 - 25783783
12172
ENSAPLT00000042898
25771612 - 25783936
12325
ENSAPLT00000030505
25770737 - 25783315
12579
ENSAPLT00000030213
25770737 - 25783936
13200