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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25796483_25797320_R

Intron Information:

Intron Rank:
151461
Intron Class:
major
Intron Phase:
Intron Coordinates:
25796483 - 25797320
Intron Length:
838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGCATT
5'SS Class:
major
3'SS Sequence:
CCTCTCCTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
CTCTCCTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
75.1
40.8
Major BPS
67.7
0.44
1
58
38.9
Major PPT
70.8
0.47
1
70.3
28
Minor 5ss
48.2
-0.2
2.9
76.7
38.2
Minor BPS
69.9
0.48
1.5
68.4
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029047
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039494
25794718 - 25797613
2896