About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25803351_25803474_R

Intron Information:

Intron Rank:
136175
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
25803351 - 25803474
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTTAG
5'SS Class:
strong_major
3'SS Sequence:
ACTTGGAAAACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAATGAC
U12 Branch Point Sequence:
TTTTTGGCAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
72.7
34.5
Major BPS
58.2
0.2
1
49.5
35.1
Major PPT
55.3
0.12
1.1
48.4
42.5
Minor 5ss
40.2
-1.1
2.7
48.2
47.9
Minor BPS
42.7
-0.4
2.7
72.8
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020698
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033272
25802655 - 25804167
1513