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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25809382_25810368_R

Intron Information:

Intron Rank:
142064
Intron Class:
major
Intron Phase:
Intron Coordinates:
25809382 - 25810368
Intron Length:
987

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTTAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
CTTGTTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
76.1
34.8
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
80.5
0.69
0.9
76.7
36.2
Minor 5ss
32.1
-2
2.7
37.9
40
Minor BPS
68.8
0.59
1.4
73.92
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023768
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033058
25809186 - 25824700
15515