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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2583559_2619715_F

Intron Information:

Intron Rank:
137847
Intron Class:
major
Intron Phase:
Intron Coordinates:
2583559 - 2619715
Intron Length:
36157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGACCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TATCAGAGGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
67
38.2
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
96
1.03
0.5
92.7
17.1
Minor 5ss
32.4
-2
3
37.8
40.6
Minor BPS
38.3
-0.8
2.4
60.9
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024233
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028356
2582740 - 2620395
37656