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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26063570_26064804_R

Intron Information:

Intron Rank:
132871
Intron Class:
major
Intron Phase:
Intron Coordinates:
26063570 - 26064804
Intron Length:
1235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.8
35
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92
0.94
0.7
87.7
29.5
Minor 5ss
40.1
-1.1
3
53.2
44.1
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018709
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045180
26062369 - 26120144
57776
ENSAPLT00000032150
26060714 - 26120144
59431