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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26064955_26118482_R

Intron Information:

Intron Rank:
132872
Intron Class:
major
Intron Phase:
Intron Coordinates:
26064955 - 26118482
Intron Length:
53528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TCTATTATTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATTAT
U12 Branch Point Sequence:
ATTTCTATTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
69.5
35.6
Major BPS
72.4
0.56
1.1
63.7
42.3
Major PPT
82.2
0.72
0.9
73.8
40.3
Minor 5ss
29.3
-2.4
3.5
40.3
46.1
Minor BPS
56
0.27
1.9
78.99
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018709
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032150
26060714 - 26120144
59431
ENSAPLT00000045180
26062369 - 26120144
57776