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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2607579_2619715_F

Intron Information:

Intron Rank:
137852
Intron Class:
major
Intron Phase:
Intron Coordinates:
2607579 - 2619715
Intron Length:
12137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCCTA
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TATCAGAGGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
65.3
42.2
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
96
1.03
0.5
92.7
17.1
Minor 5ss
36.5
-1.5
3.2
48.3
47.3
Minor BPS
38.3
-0.8
2.4
60.9
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024233
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043443
2582740 - 2635080
52341
ENSAPLT00000043219
2582740 - 2621797
39058