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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26118552_26119887_R

Intron Information:

Intron Rank:
132867
Intron Class:
major
Intron Phase:
Intron Coordinates:
26118552 - 26119887
Intron Length:
1336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGAGCT
5'SS Class:
major
3'SS Sequence:
TTTTGCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTTGCTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
0.9
70.4
33.4
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
89.7
0.89
0.7
84
31
Minor 5ss
27.8
-2.6
3.3
36.6
41.5
Minor BPS
67.1
0.53
2.1
83.52
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018709
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022593
26118303 - 26170418
52116
ENSAPLT00000045180
26062369 - 26120144
57776
ENSAPLT00000032150
26060714 - 26120144
59431