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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26118552_26120386_R

Intron Information:

Intron Rank:
132869
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
26118552 - 26120386
Intron Length:
1835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTATGTATG
5'SS Class:
weak_major
3'SS Sequence:
TTTTGCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTTGCTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.1
67.8
42.9
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
89.7
0.89
0.7
84
31
Minor 5ss
48.3
-0.1
2.5
69.5
41
Minor BPS
67.1
0.53
2.1
83.52
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018709
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027643
26118044 - 26120666
2623