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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26133729_26147987_F

Intron Information:

Intron Rank:
130426
Intron Class:
major
Intron Phase:
Intron Coordinates:
26133729 - 26147987
Intron Length:
14259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATGTATGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTGCTTTTGATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
73.9
0.54
1
70
45
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
55.4
0.02
1.3
58.52
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020159
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020716
26133586 - 26148364
14779