Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2619767_2632214_F

Intron Information:

Intron Rank:

137857

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2619767 - 2632214

Intron Length:

12448

Sequence Information:

Terminal Dinucleotides:

GT-AT

5'SS Sequence:

CAG|GTAAGTAGC

5'SS Class:

strong_major

3'SS Sequence:

TGTTATATTTCAT|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTCCAT

U12 Branch Point Sequence:

TCTGTTATATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

95.8

1.08

0.7

85.3

32.2

Major BPS

77.3

0.68

1.2

86.7

32.3

Major PPT

44.6

-0.3

3.2

70.6

44.1

Minor 5ss

36.1

-1.6

2.7

45.8

42.3

Minor BPS

45.4

-0.2

1.8

63.23

42.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024233

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043443

2582740 - 2635080

52341