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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26211593_26213088_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26211593 - 26213088
Intron Length:
1496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
CAATTCCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TGATTCTCAATT
Flanking Amino Acid:
IDSCTECTCQNSATICRKVS
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.8
85
25.6
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
76.5
0.6
0.9
69.2
36.5
Minor 5ss
42.5
-0.8
3.1
59
45.7
Minor BPS
65
0.55
1.5
77.73
38.6

Associated Gene:

Gene:
THBS1
Ensembl Gene ID:
ENSAPLG00000003908
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004064
26208927 - 26222145
13219
ENSAPLT00000033628
26208927 - 26223145
14219