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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26214899_26215220_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26214899 - 26215220
Intron Length:
322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TATTTCCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TATGTTTCAACT
Flanking Amino Acid:
TKSCQKDPCPINGNWGPWSP
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.3
26.3
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
85.2
0.79
0.7
82.4
29.2
Minor 5ss
38
-1.4
3.3
49.4
41.3
Minor BPS
59.8
0.39
1.6
76.67
40.2

Associated Gene:

Gene:
THBS1
Ensembl Gene ID:
ENSAPLG00000003908
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033628
26208927 - 26223145
14219
ENSAPLT00000004064
26208927 - 26222145
13219