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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26215698_26216433_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26215698 - 26216433
Intron Length:
736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TGTGGTCCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GTGGATTTAATT
Flanking Amino Acid:
DGIHCEDIDEVCKPRNPCTD
Intron Amino Acid Position:
600

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
71.7
40.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
68.9
0.43
0.9
59.2
42.9
Minor 5ss
31.4
-2.1
3.1
40.2
45.5
Minor BPS
55.5
0.25
1.6
69.09
42.4

Associated Gene:

Gene:
THBS1
Ensembl Gene ID:
ENSAPLG00000003908
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004064
26208927 - 26222145
13219